PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G16640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 287aa    MW: 30497.4 Da    PI: 7.5036
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G16640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +v+++G+g+W++++++ g+ R+ k+c++rw +yl
  LPERR03G16640.1 14 KGPWTPEEDIILVSYVQEHGPGNWRAVPARTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP

2Myb_DNA-binding45.81.4e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++  E+ l+v++ ++lG++ W++Ia++++ +Rt++++k++w+++l
  LPERR03G16640.1  67 RGGFSDHEERLIVHLQALLGNR-WSAIASYLP-HRTDNDIKNFWNTHL 112
                      7889******************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.408965IPR017930Myb domain
SuperFamilySSF466891.38E-2911108IPR009057Homeodomain-like
SMARTSM007175.3E-151363IPR001005SANT/Myb domain
PfamPF002492.4E-171461IPR001005SANT/Myb domain
CDDcd001671.31E-121661No hitNo description
Gene3DG3DSA:1.10.10.609.6E-2365116IPR009057Homeodomain-like
PROSITE profilePS5129418.75766116IPR017930Myb domain
SMARTSM007178.9E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1267112IPR001005SANT/Myb domain
CDDcd001671.16E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRPPCCDKE GVKKGPWTPE EDIILVSYVQ EHGPGNWRAV PARTGLLRCS KSCRLRWTNY  60
LRPGIRRGGF SDHEERLIVH LQALLGNRWS AIASYLPHRT DNDIKNFWNT HLKKKLLAAN  120
HIVSSSSTPP PAKGDWERKL QTDIGLARQA LRDALSVNGA APPAVTVNAG GGDDSAAYAL  180
NARDISMMLS GWAAPSGKGA IADGIGAAES ALSEVTGAAE CSAASSASNS NPVLAPSASA  240
SSKATVAGVP PLSAIESWLL LDDSSEPRLA LEVEEQLLDV ALRNYAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-25141164105MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-25141164105C-Myb DNA-Binding Domain
1msf_C3e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847621e-133AC084762.8 Oryza sativa chromosome 3 BAC OSJNBa0013O08 genomic sequence, complete sequence.
GenBankAF4741361e-133AF474136.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBankAP0149591e-133AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-133CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630096.11e-124PREDICTED: myb-related protein 306-like
SwissprotP813922e-91MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0D9VUK50.0A0A0D9VUK5_9ORYZ; Uncharacterized protein
STRINGORGLA03G0181800.11e-124(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-87myb domain protein 96